PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.252440.1
Common NameCsa_3G168410, LOC101218177
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 314aa    MW: 34424.9 Da    PI: 6.8574
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.252440.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.41.2e-32153211159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers+ d ++v++tYeg+H+h+
  Cucsa.252440.1 153 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSGDHTIVVTTYEGQHTHQ 211
                     59********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-34138213IPR003657WRKY domain
SuperFamilySSF1182903.92E-29145213IPR003657WRKY domain
PROSITE profilePS5081132.305148213IPR003657WRKY domain
SMARTSM007742.6E-38153212IPR003657WRKY domain
PfamPF031061.0E-25154211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGFDDSAGFY SPAVFSDDFP SSNFDSFSSI FDMPCDAHKA SNFDFYYYNN NNSNSNNNPS  60
SFFDLLSTAA PPLSSPASTV PESSEVVNAP TTPNSSSVSS SSNEAAAIEE VNNSTTTHDK  120
PSASKVLKPI KKNQKKQREP RFAFMTKSDI DHLDDGYRWR KYGQKAVKNS PYPRSYYRCT  180
TAGCGVKKRV ERSSGDHTIV VTTYEGQHTH QSPIMPRGSL RVLPESTNNS LTVDHDTTAT  240
GLLFQHNTSQ PFMYIAPPPP FLTINSSSVA ASHNPPPISF QPPSPQASVR DHGLLQDLVP  300
LQMRKEPKDE QNG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-271462131077Probable WRKY transcription factor 4
2lex_A5e-271462131077Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-180LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-180LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651087.10.0PREDICTED: probable WRKY transcription factor 48
SwissprotQ9FGZ47e-52WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A0A0L8340.0A0A0A0L834_CUCSA; Uncharacterized protein
STRINGVIT_05s0077g00730.t012e-82(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.18e-50WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]